1. Targeted enrichment
2. 10x Genomic linked-read QC and alignment
3. 10x Genomics linked-read phasing and evaluation
4. HLA typing
5. Targeted MHC assembly with both 10x Genomics linked-read data and PacBio HiFi reads
6. Targeted MHC assembly with 10x Genomics linked-read only
7. Evaluation of targeted MHC assemblies
8. Coordinates mapping between the targeted MHC assemblies and the hg38
9. Targeted assemblies of CR1 and RHCE
10. Allele-specific expression
11. Allele-specific methylation